SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments
نویسندگان
چکیده
منابع مشابه
SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments
Rapidly decreasing genome sequencing costs have led to a proportionate increase in the number of samples used in prokaryotic population studies. Extracting single nucleotide polymorphisms (SNPs) from a large whole genome alignment is now a routine task, but existing tools have failed to scale efficiently with the increased size of studies. These tools are slow, memory inefficient and are instal...
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Physico-chemical properties reflect the functional and structural characteristics of a protein. The comparative study of the physicochemical properties is important to know role of a protein in exploring its molecular evolution. A number of online and offline tools are available for calculating the physico-chemical properties of a single protein sequence. However, a tool is not available for a ...
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We have identified about 20 million rice SNPs by aligning reads from the 3000 rice genomes project with the Nipponbare genome. The SNPs and allele information are organized into a SNP-Seek system (http://www.oryzasnp.org/iric-portal/), which consists of Oracle database having a total number of rows with SNP genotypes close to 60 billion (20 M SNPs × 3 K rice lines) and web interface for conveni...
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ژورنال
عنوان ژورنال: Microbial Genomics
سال: 2016
ISSN: 2057-5858
DOI: 10.1099/mgen.0.000056